News

From Mascp

News

• Comparative phosphoproteome analysis of dicots(Arabidopsis) and monocots(rice) - May 2010

Large-Scale Comparative Phosphoproteomics Identifies Conserved Phosphorylation Sites in Plants

• New plastid and sup-plastid proteomic analysis and database - January 2010

AT_CHLORO: A comprehensive chloroplast proteome database with subplastidiallocalization and curated information on envelope proteins

• Pipeline for high confidence detection of post translational modifications using high resolution/high mass accuracy mass spectromtery - October 2009

Workflow for large scale detection and validation of peptide modifications by RPLC-LTQ-Orbitrap: application to the Arabidopsis thaliana leaf proteome and an online modified peptide library

• Proteomics used to asses unintended protein effects in transgenic Arabidopsis - October 2009

A comparative proteomics approach to detect unintended effects in transgenic Arabidopsis

• Phosophoproteome analysis of Arabidopsis seedlings identifies over 3000 phosphopeptides - June 2009

Large-scale Arabidopsis phosphoproteome profiling reveals novel chloroplast kinase substrates and phosphorylation networks

• Proteogenomics of Arabidopsis - December 2008

Discovery and revision of Arabidopsis genes by proteogenomics

• Journal of Proteome Research editorial about MASC proteomics activities - September 2008

The Multinational Arabidopsis Steering Subcommittee for Proteomics Assembles the Largest Proteome Database Resource for Plant Systems Biology.

• PhosCalc: A web based tool implementing the PTM scoring algorithm: - June 2008

PhosCalc: A tool for evaluating the sites of peptide phosphorylation from Mass Spectrometer data

• Genome-scale proteomics in Arabidopsis thaliana - May 2008

Genome-scale proteomics reveals Arabidopsis thaliana gene models and proteome dynamics.

• Uniprot crossreferences ProMEX - March 2008

UNIPROT cross-references have been added to the Protein Mass spectra EXtraction database.

• Arabidopsis Phosphoproteomics - November 2007

Database for the phosphoproteome of Arabidopsis thaliana

• Arabidopsis Peroxisome Proteomics - October 2007

Proteome Analysis of Arabidopsis Leaf Peroxisomes Reveals Novel Targeting Peptides, Metabolic Pathways, and Defense Mechanisms

• Arabidopsis Ribosome Proteomics - October 2007

Analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its components and their post-translational modification.

• MIAPE - proteomics standards- August 2007

The minimum information about a proteomics experiment (MIAPE)

• Protein interaction prediction - August 2007

A new bioinformatics article predicting protein interaction in Arabidopsis thaliana was recently published in Plant Physiology A predicted Interactome for Arabidopsis thaliana.

• ProMEX: a step towards a central mass spectral reference library for plant proteomics - July 2007

The article outlining the Arabidopsis mass spectral database ProMEX (BMC Bioinformatics 2007, 8:216) has been recently highighted as a "Highly Accessed" publication by BioMed Central. The ProMEX database was released to the public in June 2007 by the Weckwerth group at the Max Planck Institute for Molecular Plant Physiology and provides access to a mass spectral reference library from a variety of proteomic studies as well as the ability to query stored data with newly derived experimental data.

• Arabidopsis Plasma Membrane Proteomics - July 2007

A high content in lipid-modified peripheral proteins and integral receptor kinases feature in the arabidopsis plasma membrane proteome.

• Protein interaction - April 2007

A new article on protein interaction in Arabidopsis thaliana was recently published in Molecular & Cellular Proteomics describing a systematic approach for the analysis of the cell cycle interactome TAP to Study the Cell Cycle Interactome in A. thaliana.

• Green Proteomics - March 2007

Some of the objectives of MASC with an emphasis on proteomics can be found in a recent news article in the Journal of Proteome Research called Proteomics in the garden: the Arabidopsis 2010 Project. The article provides some more background information on the establishment and goals of MASC and its subcommittees.