Workshops
From Mascp
Workshops
The subcommittee plans to build a continuing presence at the International Conference on Arabidopsis Research in the form of workshops. These would aim to discuss methods/practice of proteomics, to inform the community, make new contacts, and to develop initiatives for new activities of the subcommittee. In the future symposium with invited speakers will be organized where proteome analysis in Arabidopsis is a key theme. The first proteomics workshop took place at the 2004 Berlin meeting before the subcommittee was formed. The most recent workshop was held in Yokohama at ICAR 2010, thanks to everyone who participated.
- The next MASCP workshop will likely be held in Madison, Wisconsin, USA, at ICAR 2011, all welcome.
Upcoming Workshops
We will try to organize the next workshop at:
22nd International Conference on Arabidopsis Research 2011 (Madison, Wisconsin, USA, 22-25 June 2011)
MASCP Proteomics Workshop 2011.
Any suggestions / ideas welcome.
Past Workshops
21st International Conference on Arabidopsis Research 2010 (Yokohama, Japan, June 6-10 2010)
MASCP Proteomics Workshop 2010, 12:45 to 13:45 (Monday, 7th June, Room 315).
- Plant Proteomics - A focus on phosphorylation.
Workshop organizers:
Joshua Heazlewood (Lawrence Berkeley National Labs, USA)
Alex Jones (Sainsbury Laboratory, UK)
Hiro Nakagami (RIKEN Plant Science Center, Japan)
| Session | Title | Presenter | Instiute |
|---|---|---|---|
| Talks from the MASC Proteomics Subcommittee | Introduction to the MASC Proteomics Subcommittee | Joshua Heazlewood | LBNL, USA |
| Focusing on phosphorylation. | Alex Jones | Sainsbury Lab, UK | |
| Phosphoproteomics in plants. | Hiro Nakagami | RIKEN, Japan | |
| An online Arabidopsis proteomics data aggregator. | Hiren Joshi | LBNL, USA | |
| General discussion | |||
20th International Conference on Arabidopsis Research 2009 (Edinburgh, Scotland, 30 June - 4 July 2009)
MASCP Proteomics Workshop 2009 (Tuesday, 30th June from 4:00-5:30pm)
- Plant Proteomics - breakthroughs in studying intra-cellular dynamics and environmental response in the Arabidopsis proteome.
Workshop organizers:
Harvey Millar (The University of Western Australia, Australia)
Wolfram Weckwerth (University of Vienna, Austria)
Joshua Heazlewood (Lawrence Berkeley National Labs, USA)
Alex Jones (Sainsbury Laboratory, UK)
| Session | Title | Presenter | Instiute |
|---|---|---|---|
| MASCP Subcommittee 5 min | Introduction to the MASC Proteomics Subcommittee Workshop | Harvey Millar | UWA, Australia |
| Integrating metabolomics and proteomics: a how-to guide. | Wolfram Weckwerth | UniVie, Austria | |
| Mining online Arabidopsis proteomic resources. | Joshua Heazlewood | LBNL, USA | |
| Recent advances to aid phospho-peptide analysis. | Alex Jones | Sainsbury Lab, UK | |
| Invited Talks
15 min |
15N metabolic labeling as a tool to study stress-induced dynamic changes in plasma membrane protein composition in Arabidopsis | Waltraud Schulze | MPIMP, Golm, Germany |
| Mapping of the Arabidopsis ER and post-ER glycoproteome | Alexander van der Krol | Wageningen University, The Netherlands | |
| Towards dissecting the trans Golgi network using proteomics and chemical genomics | Georgia Drakakaki | University of California, Riverside, USA | |
| Guided discussion with attendees on topics of interest, new resources etc | |||
19th International Conference on Arabidopsis Research 2008 (Montreal, Canada, 23-27 July 2008)
MASCP Proteomics Workshop 2008 (Friday, July 25th from 7:00 - 8:30 pm)
Workshop organizers:
Harvey Millar (The University of Western Australia, Australia)
Klaas van Wijk (Cornell University, Ithaca, New York, USA)
Joshua Heazlewood (Joint BioEnergy Institute, Emeryville, California, USA)
| Session | Title | Presenter | Instiute |
|---|---|---|---|
| MASCP Subcommitte 5 min | Introduction to MASC Proteomics, Standards and the Workshop | Harvey Millar | UWA, Australia |
| New Arabidopsis Proteomic Resources | Joshua Heazlewood | JBEI, USA | |
| How The Plant Cell Reviews Functional Genomics Papers | Scott Peck | Missouri, USA | |
| Quantitative proteomics of chloroplast protein biogenesis and homeostasis mutants | Klaas van Wijk | Cornell, USA | |
| Invited Talks 15 min | Transcript, Protein and Metabolite Analysis of Arabidopsis thaliana Trichomes | Berit Ebert | MPIMP, Germany |
| Parallel microarray and proteomic analysis of a seed-specific acetyl-CoA carboxylase mutant reveals assorted changes in metabolism | Mingjie Chen | Missouri, USA | |
| Analysis of MAPK signaling networks using Arabidopsis thaliana protein microarrays | Sorina Popescu | Yale, USA | |
| Discussion and Questions | |||
18th International Conference on Arabidopsis Research 2007 (Beijing, China, 20-23 June 2007)
MASCP Proteomics Workshop 2007 (Thursday, June 21, 7:30 - 9:30 pm)
Workshop organisers:
Wolfram Weckwerth (Max Planck Institute Molecular Plant Physiology, Germany)
Harvey Millar (The University of Western Australia, Australia)
| Session | Title | Presenter | Institute |
|---|---|---|---|
| General introduction | Needs, trends, methods, databases | H.Millar
H.P.Mock W.Weckwerth |
|
| Cell Biology | Towards understanding translational control: Systematic analysis of the Arabidopsis cytosolic ribosome proteome provides detailed insights into its protein complement and their post-translational modification. | Adam Carroll | UWA, Australia |
| Hormonal Responses | Proteomic and genomic studies of the brassinosteroid signal transduction pathway. | Zhi-Yong Wang | Stanford, USA |
| Cell Biology | Understanding Arabidopsis peroxisomal proteomes. | Jianping Hu | MSU, USA |
| Responses to the Environment | Proteome analysis of the cold stress response in Arabidopsis thaliana. | Hans-Peter Mock | IPK, Germany |
| General discussion | |||
| Poster presentation and individual talks | |||
15th International Conference on Arabidopsis Research 2004 (Berlin, Germany, 11-14 July 2004)
Proteomics in Arabidopsis (Monday 12th July 2004, 20:00 - 22:30)
Workshop organizers:
Harvey Millar, The University of Western Australia
Hans-Peter Braun, University of Hannover
| Part I: State of the art: Proteomics in Arabidopsis | ||
| Title | Presenter | Institute |
|---|---|---|
| Gel-based proteomics. | Hans-Peter Braun | Universität Hannover, Hannover, Germany |
| Shot gun proteomics. | Joshua Heazlewood | The University of Western Australia |
| Differential proteomics and quantitative proteomics. | Hans-Peter Mock | Institute for Plant Genetics and Crop Plant Resarch, Germany |
| Integration of proteomic data and bioinformatic data. | Dario Leister | Max Planck Institute for Plant Breeding Research, Germany. |
| Proteomic/mass spectrometry standards. | Harvey Millar | The University of Western Australia, Australia. |
| Part II: Open discussion | ||
| - perspectives of proteomics for Arabidopsis research | ||
| - annotation of proteome data | ||